[ubuntu/cosmic-proposed] seqan2 2.4.0+dfsg-8ubuntu1 (Accepted)

Steve Langasek steve.langasek at ubuntu.com
Tue May 15 18:31:19 UTC 2018 

seqan2 (2.4.0+dfsg-8ubuntu1) cosmic; urgency=low

  * Merge from Debian unstable.  Remaining changes:
    - Add amd64, arm64, and ppc64el to the list of "low-memory" architectures
  * Dropped changes, included in Debian:
    - Enable build on armhf

seqan2 (2.4.0+dfsg-8) unstable; urgency=medium

  * Fix AutoPkgTests. Miscellaneous cleanups of debian/rules.
  * Use seperate build directory for the -dev package so we can run cmake with
    -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY

seqan2 (2.4.0+dfsg-7) unstable; urgency=medium

  * Split override_dh_install into -arch and -indep

seqan2 (2.4.0+dfsg-6) unstable; urgency=medium

  * Retry building on mips*; patch adapted from Adrian Bunk <bunk at debian.org>
    Closes: #890385. Thanks!
  * Document CWL generation via README.source. Mark all CWL files as
    executable
  * Enable AutoPackageTests for seqan-apps
  * Applied 2 patches from upstream: add mandatory ctdVersion element,
    fix errors in manpage output
  * Suggest cwltool | cwl-runner.

seqan2 (2.4.0+dfsg-5) unstable; urgency=medium

  * Ship CWL descriptions for a subset of seqan-apps
  * Give up on mips & mipsel due to lack of memory

seqan2 (2.4.0+dfsg-4) unstable; urgency=medium

  * Update seqan-config.cmake installation location as per upstream:
    https://github.com/seqan/seqan/issues/2276
  * Drop mips* to -O2 from -O3

seqan2 (2.4.0+dfsg-3) unstable; urgency=medium

  * Remove parallel building form mips{,el}
  * AMD64 is freezing up on the builders, drop max parallel builds to 2

seqan2 (2.4.0+dfsg-2) unstable; urgency=medium

  * Drop mips{,el} down to 2 max parallel builds.
  * Latest release fixes the failing tests issue. (Closes: #884548)

seqan2 (2.4.0+dfsg-1) unstable; urgency=medium

  * 2.4.0 is released!
  * Install seqan-2.pc to /usr/share/pkgconfig as it is arch independent

seqan2 (2.4.0~rc2+dfsg-1) experimental; urgency=medium

  * Testing upstream's 3rd formal release candidate for 2.4.0
  * debian/rules: use --max-parallel to more cleanly limit parallel building

seqan2 (2.4.0~rc1+dfsg-2) experimental; urgency=medium

  * debian/rules: Drop amd64, mips, mipsel to -j3 to save memory

seqan2 (2.4.0~rc1+dfsg-1) experimental; urgency=medium

  * Testing upstream's 2nd formal release candidate for 2.4.0

seqan2 (2.4.0~rc0+dfsg-1) experimental; urgency=medium

  * Testing upstream's formal release candidate

seqan2 (2.3.2.001platform-issues10-6f85721+dfsg-2) experimental; urgency=medium

  * enable asyncio on all archs as a test
  * disable parallel building on powerpcspe

seqan2 (2.3.2.001platform-issues10-6f85721+dfsg-1) experimental; urgency=medium

  * Hopefully final update from upstream :-)

seqan2 (2.3.2.000platform-issues9-028fd79+dfsg-1) experimental; urgency=medium

  * Another update from upstream
  * debian/rules: build flags simplification:
      - use DEB_*_MAINT_APPEND
      - pass -DNDEBUG -O3 as per upstream
      - drop -DSEQAN_BUILD_SYSTEM=DEVELOP as that is the default

seqan2 (2.3.2.000platform-issues8-6f85721+dfsg-2) experimental; urgency=medium

  * Force rebuild

seqan2 (2.3.2.000platform-issues8-6f85721+dfsg-1) experimental; urgency=medium

  * Another update from upstream

seqan2 (2.3.2.000platform-issues7-41f58c3+dfsg-2) experimental; urgency=medium

  [ Andreas Tille ]
  * Work around missing dir in indep-only builds
    Closes: #882169

  [ Michael R. Crusoe ]
  * Cleanup from not pushing my changes

seqan2 (2.3.2.000platform-issues7-41f58c3+dfsg-1) experimental; urgency=medium

   * Another update from upstream

seqan2 (2.3.2.000platform-issues6-9cf5a69+dfsg-3) experimental; urgency=medium

  * Typo fix

seqan2 (2.3.2.000platform-issues6-9cf5a69+dfsg-2) experimental; urgency=medium

  * Now try -O3 everywhere
  * Remove the sparc64 test code
  * Delete symlinks for apps that are skipped for a particular architecture

seqan2 (2.3.2.000platform-issues6-9cf5a69+dfsg-1) experimental; urgency=medium

  * Skip yara on kfreebsd-i386
  * Try out -O2 on archs that had been previously -O1
  * Fix typo in bam2roi help text
  * From upstream: another round of changes for the problems that affect
    all big endian.

seqan2 (2.3.2.000platform-issues5-86390dc+dfsg-1) experimental; urgency=medium

  * Another update from upstream including a tweak to sparc64

seqan2 (2.3.2.000platform-issues4-fba8744+dfsg-1) experimental; urgency=medium

  * Another refresh from upstream's branch
  * Skip yara on armel, as well.
  * d/control: declare seqan2 can be built without root, R³:no.

seqan2 (2.3.2.000platform-issues3-1d438c8+dfsg-2) experimental; urgency=medium

  * Skip yara on armhf & sh4.
  * Disable parallel building on armel

seqan2 (2.3.2.000platform-issues3-1d438c8+dfsg-1) experimental; urgency=medium

  * require tests to pass everywhere
  * skip the razers{3,} and yara apps on mips{el,}
  * restore parallel build blocking only for armhf, sh4, and kfreebsd*
  * Another refresh from upstream, this time focusing on bam files

seqan2 (2.3.2.000platform-issues2-206d1f7+dfsg-1) experimental; urgency=medium

  * Typo for CXXFLAGS: -O1 instead of -01
  * Another refresh from upstream in response to errors discovered via the
    Debian build machines.

seqan2 (2.3.2.000platform-issues1-66a8baf+dfsg-1) experimental; urgency=medium

  * Refresh from upstream with additional fixes

seqan2 (2.3.2.000platform-issues0-8ae7bc0+dfsg1-1) experimental; urgency=medium

  * Patch for mips64el from bunk at debian.org (Closes: #878933)
  * Temporarily enable all archs again
  * Upstream source is pre-2.4.0, remove patches that they have merged:
    short-description, spelling
  * Cleaned up per-arch settings in debian/rules

Date: Tue, 15 May 2018 11:19:57 -0700
Changed-By: Steve Langasek <steve.langasek at ubuntu.com>
Maintainer: Ubuntu Developers <ubuntu-devel-discuss at lists.ubuntu.com>
https://launchpad.net/ubuntu/+source/seqan2/2.4.0+dfsg-8ubuntu1
-------------- next part --------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Tue, 15 May 2018 11:19:57 -0700
Source: seqan2
Binary: seqan-apps libseqan2-dev
Architecture: source
Version: 2.4.0+dfsg-8ubuntu1
Distribution: cosmic
Urgency: medium
Maintainer: Ubuntu Developers <ubuntu-devel-discuss at lists.ubuntu.com>
Changed-By: Steve Langasek <steve.langasek at ubuntu.com>
Description:
 libseqan2-dev - C++ library for the analysis of biological sequences (development
 seqan-apps - C++ library for the analysis of biological sequences
Closes: 878933 882169 884548 890385
Changes:
 seqan2 (2.4.0+dfsg-8ubuntu1) cosmic; urgency=low
 .
   * Merge from Debian unstable.  Remaining changes:
     - Add amd64, arm64, and ppc64el to the list of "low-memory" architectures
   * Dropped changes, included in Debian:
     - Enable build on armhf
 .
 seqan2 (2.4.0+dfsg-8) unstable; urgency=medium
 .
   * Fix AutoPkgTests. Miscellaneous cleanups of debian/rules.
   * Use seperate build directory for the -dev package so we can run cmake with
     -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY
 .
 seqan2 (2.4.0+dfsg-7) unstable; urgency=medium
 .
   * Split override_dh_install into -arch and -indep
 .
 seqan2 (2.4.0+dfsg-6) unstable; urgency=medium
 .
   * Retry building on mips*; patch adapted from Adrian Bunk <bunk at debian.org>
     Closes: #890385. Thanks!
   * Document CWL generation via README.source. Mark all CWL files as
     executable
   * Enable AutoPackageTests for seqan-apps
   * Applied 2 patches from upstream: add mandatory ctdVersion element,
     fix errors in manpage output
   * Suggest cwltool | cwl-runner.
 .
 seqan2 (2.4.0+dfsg-5) unstable; urgency=medium
 .
   * Ship CWL descriptions for a subset of seqan-apps
   * Give up on mips & mipsel due to lack of memory
 .
 seqan2 (2.4.0+dfsg-4) unstable; urgency=medium
 .
   * Update seqan-config.cmake installation location as per upstream:
     https://github.com/seqan/seqan/issues/2276
   * Drop mips* to -O2 from -O3
 .
 seqan2 (2.4.0+dfsg-3) unstable; urgency=medium
 .
   * Remove parallel building form mips{,el}
   * AMD64 is freezing up on the builders, drop max parallel builds to 2
 .
 seqan2 (2.4.0+dfsg-2) unstable; urgency=medium
 .
   * Drop mips{,el} down to 2 max parallel builds.
   * Latest release fixes the failing tests issue. (Closes: #884548)
 .
 seqan2 (2.4.0+dfsg-1) unstable; urgency=medium
 .
   * 2.4.0 is released!
   * Install seqan-2.pc to /usr/share/pkgconfig as it is arch independent
 .
 seqan2 (2.4.0~rc2+dfsg-1) experimental; urgency=medium
 .
   * Testing upstream's 3rd formal release candidate for 2.4.0
   * debian/rules: use --max-parallel to more cleanly limit parallel building
 .
 seqan2 (2.4.0~rc1+dfsg-2) experimental; urgency=medium
 .
   * debian/rules: Drop amd64, mips, mipsel to -j3 to save memory
 .
 seqan2 (2.4.0~rc1+dfsg-1) experimental; urgency=medium
 .
   * Testing upstream's 2nd formal release candidate for 2.4.0
 .
 seqan2 (2.4.0~rc0+dfsg-1) experimental; urgency=medium
 .
   * Testing upstream's formal release candidate
 .
 seqan2 (2.3.2.001platform-issues10-6f85721+dfsg-2) experimental; urgency=medium
 .
   * enable asyncio on all archs as a test
   * disable parallel building on powerpcspe
 .
 seqan2 (2.3.2.001platform-issues10-6f85721+dfsg-1) experimental; urgency=medium
 .
   * Hopefully final update from upstream :-)
 .
 seqan2 (2.3.2.000platform-issues9-028fd79+dfsg-1) experimental; urgency=medium
 .
   * Another update from upstream
   * debian/rules: build flags simplification:
       - use DEB_*_MAINT_APPEND
       - pass -DNDEBUG -O3 as per upstream
       - drop -DSEQAN_BUILD_SYSTEM=DEVELOP as that is the default
 .
 seqan2 (2.3.2.000platform-issues8-6f85721+dfsg-2) experimental; urgency=medium
 .
   * Force rebuild
 .
 seqan2 (2.3.2.000platform-issues8-6f85721+dfsg-1) experimental; urgency=medium
 .
   * Another update from upstream
 .
 seqan2 (2.3.2.000platform-issues7-41f58c3+dfsg-2) experimental; urgency=medium
 .
   [ Andreas Tille ]
   * Work around missing dir in indep-only builds
     Closes: #882169
 .
   [ Michael R. Crusoe ]
   * Cleanup from not pushing my changes
 .
 seqan2 (2.3.2.000platform-issues7-41f58c3+dfsg-1) experimental; urgency=medium
 .
    * Another update from upstream
 .
 seqan2 (2.3.2.000platform-issues6-9cf5a69+dfsg-3) experimental; urgency=medium
 .
   * Typo fix
 .
 seqan2 (2.3.2.000platform-issues6-9cf5a69+dfsg-2) experimental; urgency=medium
 .
   * Now try -O3 everywhere
   * Remove the sparc64 test code
   * Delete symlinks for apps that are skipped for a particular architecture
 .
 seqan2 (2.3.2.000platform-issues6-9cf5a69+dfsg-1) experimental; urgency=medium
 .
   * Skip yara on kfreebsd-i386
   * Try out -O2 on archs that had been previously -O1
   * Fix typo in bam2roi help text
   * From upstream: another round of changes for the problems that affect
     all big endian.
 .
 seqan2 (2.3.2.000platform-issues5-86390dc+dfsg-1) experimental; urgency=medium
 .
   * Another update from upstream including a tweak to sparc64
 .
 seqan2 (2.3.2.000platform-issues4-fba8744+dfsg-1) experimental; urgency=medium
 .
   * Another refresh from upstream's branch
   * Skip yara on armel, as well.
   * d/control: declare seqan2 can be built without root, R³:no.
 .
 seqan2 (2.3.2.000platform-issues3-1d438c8+dfsg-2) experimental; urgency=medium
 .
   * Skip yara on armhf & sh4.
   * Disable parallel building on armel
 .
 seqan2 (2.3.2.000platform-issues3-1d438c8+dfsg-1) experimental; urgency=medium
 .
   * require tests to pass everywhere
   * skip the razers{3,} and yara apps on mips{el,}
   * restore parallel build blocking only for armhf, sh4, and kfreebsd*
   * Another refresh from upstream, this time focusing on bam files
 .
 seqan2 (2.3.2.000platform-issues2-206d1f7+dfsg-1) experimental; urgency=medium
 .
   * Typo for CXXFLAGS: -O1 instead of -01
   * Another refresh from upstream in response to errors discovered via the
     Debian build machines.
 .
 seqan2 (2.3.2.000platform-issues1-66a8baf+dfsg-1) experimental; urgency=medium
 .
   * Refresh from upstream with additional fixes
 .
 seqan2 (2.3.2.000platform-issues0-8ae7bc0+dfsg1-1) experimental; urgency=medium
 .
   * Patch for mips64el from bunk at debian.org (Closes: #878933)
   * Temporarily enable all archs again
   * Upstream source is pre-2.4.0, remove patches that they have merged:
     short-description, spelling
   * Cleaned up per-arch settings in debian/rules
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Checksums-Sha256:
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 9e69ff4130519b9c9bf019df6faaa280f35d9fd0485cfcfe270c525744bbe86e 84125556 seqan2_2.4.0+dfsg.orig.tar.xz
 5c77cffa2334b0c802737f5f847c2f7ce3bb1dcee25274178d7f479b19247b0f 30836 seqan2_2.4.0+dfsg-8ubuntu1.debian.tar.xz
 a94f703f622068ac0b95be3665aa58518f1c28aa77af8ebbcb38f8e39520986b 6618 seqan2_2.4.0+dfsg-8ubuntu1_source.buildinfo
Files:
 b963d2af4d072a0d1de19f372fd5a28e 2419 science optional seqan2_2.4.0+dfsg-8ubuntu1.dsc
 c0a126276b1b2864cde3a3b00a7516b5 84125556 science optional seqan2_2.4.0+dfsg.orig.tar.xz
 d60fe3152ebd6128ac5080f700ec58e9 30836 science optional seqan2_2.4.0+dfsg-8ubuntu1.debian.tar.xz
 e1c4e303cf5ec84b4f3530640a35c4f0 6618 science optional seqan2_2.4.0+dfsg-8ubuntu1_source.buildinfo
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>

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