[Bug 1572903] [NEW] Upgrade from 14.04 to 16.04 dependency issues

Mario Costa mario.silva.costa at gmail.com
Thu Apr 21 08:58:15 UTC 2016 

Public bug reported:

While upgrading from ubuntu 14.04 LTS to 16.04 LTS had errors regarding
several packages, such as systemd-sysv and init package and others ...

Please refer to the attached logs.

Also the folowing errors:

sudo update-manager -d
[sudo] password for xxxxxxxx: 
Checking for a new Ubuntu release
No bp log location saved, using default.
[000:000] Cpu: 6.69.1, x4, 2401Mhz, 7868MB
[000:001] Computer model: Not available
[000:001] Browser XEmbed support present: 1
[000:001] Browser toolkit is Gtk2.
[000:003] Using Gtk2 toolkit
No bp log location saved, using default.
[000:000] Cpu: 6.69.1, x4, 2401Mhz, 7868MB
[000:000] Computer model: Not available
[000:179] Warning(optionsfile.cc:30): Load: Could not open file, err=2
[000:179] No bp log location saved, using default.
[000:179] Cpu: 6.69.1, x4, 2401Mhz, 7868MB
[000:179] Computer model: Not available
[000:179] Browser XEmbed support present: 1
[000:179] Browser toolkit is Gtk2.
[000:179] Using Gtk2 toolkit
[000:138] Warning(optionsfile.cc:30): Load: Could not open file, err=2
[000:139] No bp log location saved, using default.
[000:139] Cpu: 6.69.1, x4, 2401Mhz, 7868MB
[000:139] Computer model: Not available
/usr/lib/python3/dist-packages/DistUpgrade/DistUpgradeFetcher.py:86: Warning: g_object_ref: assertion 'object->ref_count > 0' failed
  res = self.widgets.dialog_release_notes.run()
/usr/lib/python3/dist-packages/DistUpgrade/DistUpgradeFetcher.py:86: Warning: g_object_unref: assertion 'object->ref_count > 0' failed
  res = self.widgets.dialog_release_notes.run()
authenticate 'xenial.tar.gz' against 'xenial.tar.gz.gpg' 
extracting 'xenial.tar.gz'
Traceback (most recent call last):
  File "/usr/share/apport/package_hook", line 19, in <module>
    import apport
  File "/usr/lib/python3/dist-packages/apport/__init__.py", line 5, in <module>
    from apport.report import Report
  File "/usr/lib/python3/dist-packages/apport/report.py", line 30, in <module>
    import apport.fileutils
  File "/usr/lib/python3/dist-packages/apport/fileutils.py", line 23, in <module>
    from apport.packaging_impl import impl as packaging
  File "/usr/lib/python3/dist-packages/apport/packaging_impl.py", line 20, in <module>
    import apt
  File "/usr/lib/python3/dist-packages/apt/__init__.py", line 23, in <module>
    import apt_pkg
ImportError: /usr/lib/x86_64-linux-gnu/libapt-pkg.so.5.0: symbol _ZNKSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE7compareERKS4_, version GLIBCXX_3.4.21 not defined in file libstdc++.so.6 with link time reference
Error in sys.excepthook:
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/apport_python_hook.py", line 63, in apport_excepthook
    from apport.fileutils import likely_packaged, get_recent_crashes
  File "/usr/lib/python3/dist-packages/apport/__init__.py", line 5, in <module>
    from apport.report import Report
  File "/usr/lib/python3/dist-packages/apport/report.py", line 30, in <module>
    import apport.fileutils
  File "/usr/lib/python3/dist-packages/apport/fileutils.py", line 23, in <module>
    from apport.packaging_impl import impl as packaging
  File "/usr/lib/python3/dist-packages/apport/packaging_impl.py", line 20, in <module>
    import apt
  File "/usr/lib/python3/dist-packages/apt/__init__.py", line 23, in <module>
    import apt_pkg
ImportError: /usr/lib/x86_64-linux-gnu/libapt-pkg.so.5.0: symbol _ZNKSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE7compareERKS4_, version GLIBCXX_3.4.21 not defined in file libstdc++.so.6 with link time reference

Original exception was:
Traceback (most recent call last):
  File "/usr/share/apport/package_hook", line 19, in <module>
    import apport
  File "/usr/lib/python3/dist-packages/apport/__init__.py", line 5, in <module>
    from apport.report import Report
  File "/usr/lib/python3/dist-packages/apport/report.py", line 30, in <module>
    import apport.fileutils
  File "/usr/lib/python3/dist-packages/apport/fileutils.py", line 23, in <module>
    from apport.packaging_impl import impl as packaging
  File "/usr/lib/python3/dist-packages/apport/packaging_impl.py", line 20, in <module>
    import apt
  File "/usr/lib/python3/dist-packages/apt/__init__.py", line 23, in <module>
    import apt_pkg
ImportError: /usr/lib/x86_64-linux-gnu/libapt-pkg.so.5.0: symbol _ZNKSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE7compareERKS4_, version GLIBCXX_3.4.21 not defined in file libstdc++.so.6 with link time reference
Traceback (most recent call last):
  File "/usr/share/apport/package_hook", line 19, in <module>
    import apport
  File "/usr/lib/python3/dist-packages/apport/__init__.py", line 5, in <module>
    from apport.report import Report
  File "/usr/lib/python3/dist-packages/apport/report.py", line 30, in <module>
    import apport.fileutils
  File "/usr/lib/python3/dist-packages/apport/fileutils.py", line 23, in <module>
    from apport.packaging_impl import impl as packaging
  File "/usr/lib/python3/dist-packages/apport/packaging_impl.py", line 20, in <module>
    import apt
  File "/usr/lib/python3/dist-packages/apt/__init__.py", line 23, in <module>
    import apt_pkg
ImportError: /usr/lib/x86_64-linux-gnu/libapt-pkg.so.5.0: symbol _ZNKSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE7compareERKS4_, version GLIBCXX_3.4.21 not defined in file libstdc++.so.6 with link time reference
Error in sys.excepthook:
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/apport_python_hook.py", line 63, in apport_excepthook
    from apport.fileutils import likely_packaged, get_recent_crashes
  File "/usr/lib/python3/dist-packages/apport/__init__.py", line 5, in <module>
    from apport.report import Report
  File "/usr/lib/python3/dist-packages/apport/report.py", line 30, in <module>
    import apport.fileutils
  File "/usr/lib/python3/dist-packages/apport/fileutils.py", line 23, in <module>
    from apport.packaging_impl import impl as packaging
  File "/usr/lib/python3/dist-packages/apport/packaging_impl.py", line 20, in <module>
    import apt
  File "/usr/lib/python3/dist-packages/apt/__init__.py", line 23, in <module>
    import apt_pkg
ImportError: /usr/lib/x86_64-linux-gnu/libapt-pkg.so.5.0: symbol _ZNKSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE7compareERKS4_, version GLIBCXX_3.4.21 not defined in file libstdc++.so.6 with link time reference

Original exception was:
Traceback (most recent call last):
  File "/usr/share/apport/package_hook", line 19, in <module>
    import apport
  File "/usr/lib/python3/dist-packages/apport/__init__.py", line 5, in <module>
    from apport.report import Report
  File "/usr/lib/python3/dist-packages/apport/report.py", line 30, in <module>
    import apport.fileutils
  File "/usr/lib/python3/dist-packages/apport/fileutils.py", line 23, in <module>
    from apport.packaging_impl import impl as packaging
  File "/usr/lib/python3/dist-packages/apport/packaging_impl.py", line 20, in <module>
    import apt
  File "/usr/lib/python3/dist-packages/apt/__init__.py", line 23, in <module>
    import apt_pkg
ImportError: /usr/lib/x86_64-linux-gnu/libapt-pkg.so.5.0: symbol _ZNKSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE7compareERKS4_, version GLIBCXX_3.4.21 not defined in file libstdc++.so.6 with link time reference
ERROR: Cannot create report: [Errno 17] File exists: '/var/crash/init.0.crash'

** Affects: init-system-helpers (Ubuntu)
     Importance: Undecided
         Status: New


** Tags: dist-upgrade trusty2xenial

** Attachment added: "dist-upgrade logs"
   https://bugs.launchpad.net/bugs/1572903/+attachment/4641241/+files/dist-upgrade.tgz

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https://bugs.launchpad.net/bugs/1572903

Title:
  Upgrade from 14.04 to 16.04 dependency issues

Status in init-system-helpers package in Ubuntu:
  New

Bug description:
  While upgrading from ubuntu 14.04 LTS to 16.04 LTS had errors
  regarding several packages, such as systemd-sysv and init package and
  others ...

  Please refer to the attached logs.

  Also the folowing errors:

  sudo update-manager -d
  [sudo] password for xxxxxxxx: 
  Checking for a new Ubuntu release
  No bp log location saved, using default.
  [000:000] Cpu: 6.69.1, x4, 2401Mhz, 7868MB
  [000:001] Computer model: Not available
  [000:001] Browser XEmbed support present: 1
  [000:001] Browser toolkit is Gtk2.
  [000:003] Using Gtk2 toolkit
  No bp log location saved, using default.
  [000:000] Cpu: 6.69.1, x4, 2401Mhz, 7868MB
  [000:000] Computer model: Not available
  [000:179] Warning(optionsfile.cc:30): Load: Could not open file, err=2
  [000:179] No bp log location saved, using default.
  [000:179] Cpu: 6.69.1, x4, 2401Mhz, 7868MB
  [000:179] Computer model: Not available
  [000:179] Browser XEmbed support present: 1
  [000:179] Browser toolkit is Gtk2.
  [000:179] Using Gtk2 toolkit
  [000:138] Warning(optionsfile.cc:30): Load: Could not open file, err=2
  [000:139] No bp log location saved, using default.
  [000:139] Cpu: 6.69.1, x4, 2401Mhz, 7868MB
  [000:139] Computer model: Not available
  /usr/lib/python3/dist-packages/DistUpgrade/DistUpgradeFetcher.py:86: Warning: g_object_ref: assertion 'object->ref_count > 0' failed
    res = self.widgets.dialog_release_notes.run()
  /usr/lib/python3/dist-packages/DistUpgrade/DistUpgradeFetcher.py:86: Warning: g_object_unref: assertion 'object->ref_count > 0' failed
    res = self.widgets.dialog_release_notes.run()
  authenticate 'xenial.tar.gz' against 'xenial.tar.gz.gpg' 
  extracting 'xenial.tar.gz'
  Traceback (most recent call last):
    File "/usr/share/apport/package_hook", line 19, in <module>
      import apport
    File "/usr/lib/python3/dist-packages/apport/__init__.py", line 5, in <module>
      from apport.report import Report
    File "/usr/lib/python3/dist-packages/apport/report.py", line 30, in <module>
      import apport.fileutils
    File "/usr/lib/python3/dist-packages/apport/fileutils.py", line 23, in <module>
      from apport.packaging_impl import impl as packaging
    File "/usr/lib/python3/dist-packages/apport/packaging_impl.py", line 20, in <module>
      import apt
    File "/usr/lib/python3/dist-packages/apt/__init__.py", line 23, in <module>
      import apt_pkg
  ImportError: /usr/lib/x86_64-linux-gnu/libapt-pkg.so.5.0: symbol _ZNKSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE7compareERKS4_, version GLIBCXX_3.4.21 not defined in file libstdc++.so.6 with link time reference
  Error in sys.excepthook:
  Traceback (most recent call last):
    File "/usr/lib/python3/dist-packages/apport_python_hook.py", line 63, in apport_excepthook
      from apport.fileutils import likely_packaged, get_recent_crashes
    File "/usr/lib/python3/dist-packages/apport/__init__.py", line 5, in <module>
      from apport.report import Report
    File "/usr/lib/python3/dist-packages/apport/report.py", line 30, in <module>
      import apport.fileutils
    File "/usr/lib/python3/dist-packages/apport/fileutils.py", line 23, in <module>
      from apport.packaging_impl import impl as packaging
    File "/usr/lib/python3/dist-packages/apport/packaging_impl.py", line 20, in <module>
      import apt
    File "/usr/lib/python3/dist-packages/apt/__init__.py", line 23, in <module>
      import apt_pkg
  ImportError: /usr/lib/x86_64-linux-gnu/libapt-pkg.so.5.0: symbol _ZNKSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE7compareERKS4_, version GLIBCXX_3.4.21 not defined in file libstdc++.so.6 with link time reference

  Original exception was:
  Traceback (most recent call last):
    File "/usr/share/apport/package_hook", line 19, in <module>
      import apport
    File "/usr/lib/python3/dist-packages/apport/__init__.py", line 5, in <module>
      from apport.report import Report
    File "/usr/lib/python3/dist-packages/apport/report.py", line 30, in <module>
      import apport.fileutils
    File "/usr/lib/python3/dist-packages/apport/fileutils.py", line 23, in <module>
      from apport.packaging_impl import impl as packaging
    File "/usr/lib/python3/dist-packages/apport/packaging_impl.py", line 20, in <module>
      import apt
    File "/usr/lib/python3/dist-packages/apt/__init__.py", line 23, in <module>
      import apt_pkg
  ImportError: /usr/lib/x86_64-linux-gnu/libapt-pkg.so.5.0: symbol _ZNKSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE7compareERKS4_, version GLIBCXX_3.4.21 not defined in file libstdc++.so.6 with link time reference
  Traceback (most recent call last):
    File "/usr/share/apport/package_hook", line 19, in <module>
      import apport
    File "/usr/lib/python3/dist-packages/apport/__init__.py", line 5, in <module>
      from apport.report import Report
    File "/usr/lib/python3/dist-packages/apport/report.py", line 30, in <module>
      import apport.fileutils
    File "/usr/lib/python3/dist-packages/apport/fileutils.py", line 23, in <module>
      from apport.packaging_impl import impl as packaging
    File "/usr/lib/python3/dist-packages/apport/packaging_impl.py", line 20, in <module>
      import apt
    File "/usr/lib/python3/dist-packages/apt/__init__.py", line 23, in <module>
      import apt_pkg
  ImportError: /usr/lib/x86_64-linux-gnu/libapt-pkg.so.5.0: symbol _ZNKSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE7compareERKS4_, version GLIBCXX_3.4.21 not defined in file libstdc++.so.6 with link time reference
  Error in sys.excepthook:
  Traceback (most recent call last):
    File "/usr/lib/python3/dist-packages/apport_python_hook.py", line 63, in apport_excepthook
      from apport.fileutils import likely_packaged, get_recent_crashes
    File "/usr/lib/python3/dist-packages/apport/__init__.py", line 5, in <module>
      from apport.report import Report
    File "/usr/lib/python3/dist-packages/apport/report.py", line 30, in <module>
      import apport.fileutils
    File "/usr/lib/python3/dist-packages/apport/fileutils.py", line 23, in <module>
      from apport.packaging_impl import impl as packaging
    File "/usr/lib/python3/dist-packages/apport/packaging_impl.py", line 20, in <module>
      import apt
    File "/usr/lib/python3/dist-packages/apt/__init__.py", line 23, in <module>
      import apt_pkg
  ImportError: /usr/lib/x86_64-linux-gnu/libapt-pkg.so.5.0: symbol _ZNKSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE7compareERKS4_, version GLIBCXX_3.4.21 not defined in file libstdc++.so.6 with link time reference

  Original exception was:
  Traceback (most recent call last):
    File "/usr/share/apport/package_hook", line 19, in <module>
      import apport
    File "/usr/lib/python3/dist-packages/apport/__init__.py", line 5, in <module>
      from apport.report import Report
    File "/usr/lib/python3/dist-packages/apport/report.py", line 30, in <module>
      import apport.fileutils
    File "/usr/lib/python3/dist-packages/apport/fileutils.py", line 23, in <module>
      from apport.packaging_impl import impl as packaging
    File "/usr/lib/python3/dist-packages/apport/packaging_impl.py", line 20, in <module>
      import apt
    File "/usr/lib/python3/dist-packages/apt/__init__.py", line 23, in <module>
      import apt_pkg
  ImportError: /usr/lib/x86_64-linux-gnu/libapt-pkg.so.5.0: symbol _ZNKSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE7compareERKS4_, version GLIBCXX_3.4.21 not defined in file libstdc++.so.6 with link time reference
  ERROR: Cannot create report: [Errno 17] File exists: '/var/crash/init.0.crash'

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