[Bug 1768379] Re: failed 16.04 LTS -> 18.04 LTS upgrade

Seth Arnold 1768379 at bugs.launchpad.net
Wed May 9 00:03:22 UTC 2018 

I finished searching my audit logs and found nothing out of the ordinary
-- the only AppArmor DENIED entries from around the time of the upgrade
are from Firefox and Pulseaudio. (It was fun to see dpkg installing new
timezone files tripping my audit logs for time handling.)

Thanks

-- 
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https://bugs.launchpad.net/bugs/1768379

Title:
  failed 16.04 LTS -> 18.04 LTS upgrade

Status in ubuntu-release-upgrader package in Ubuntu:
  Confirmed

Bug description:
  do-release-upgrade -d  on my 16.04 LTS unity laptop lead to an install
  failure:

  Fetched 2,320 MB in 6s (27.8 MB/s)

  Upgrading
  Inhibiting until Ctrl+C is pressed...
  Fetched 0 B in 0s (0 B/s)                                                                                         
  Extracting templates from packages: 100%
  Preconfiguring packages ...
  setting xserver-xorg-legacy/xwrapper/allowed_users from configuration file
  Extracting templates from packages: 100%
  Preconfiguring packages ...
  setting xserver-xorg-legacy/xwrapper/allowed_users from configuration file
  Extracting templates from packages: 100%
  Preconfiguring packages ...
  setting xserver-xorg-legacy/xwrapper/allowed_users from configuration file
  Extracting templates from packages: 100%
  Preconfiguring packages ...
  setting xserver-xorg-legacy/xwrapper/allowed_users from configuration file
  (Reading database ... 373383 files and directories currently installed.)
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  Processing triggers for plymouth-theme-ubuntu-text (0.9.2-3ubuntu13.4) ...
  update-initramfs: deferring update (trigger activated)
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  Processing triggers for initramfs-tools (0.122ubuntu8.11) ...
  update-initramfs: Generating /boot/initrd.img-4.4.0-122-generic
  Setting up base-files (10.1ubuntu2) ...
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  Updating /etc/profile to current default.
  motd-news.service is a disabled or a static unit, not starting it.
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  update-initramfs: deferring update (trigger activated)
  Processing triggers for initramfs-tools (0.122ubuntu8.11) ...
  update-initramfs: Generating /boot/initrd.img-4.4.0-122-generic
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  Error in `/usr/share/doc-base/netfilter-extensions', line 9: all `Format' sections are invalid.
  Error in `/usr/share/doc-base/netfilter-hacking', line 9: all `Format' sections are invalid.
  Note: `install-docs --verbose --check file_name' may give more details about the above errors.
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  Preparing to unpack .../libfreetype6_2.8.1-2ubuntu2_amd64.deb ...
  Unpacking libfreetype6:amd64 (2.8.1-2ubuntu2) over (2.6.1-0.1ubuntu2.3) ...
  Preparing to unpack .../libharfbuzz0b_1.7.2-1ubuntu1_amd64.deb ...
  Unpacking libharfbuzz0b:amd64 (1.7.2-1ubuntu1) over (1.0.1-1ubuntu0.1) ...
  Preparing to unpack .../libpangoft2-1.0-0_1.40.14-1_amd64.deb ...
  Unpacking libpangoft2-1.0-0:amd64 (1.40.14-1) over (1.38.1-1) ...
  Preparing to unpack .../libpangoxft-1.0-0_1.40.14-1_amd64.deb ...
  Unpacking libpangoxft-1.0-0:amd64 (1.40.14-1) over (1.38.1-1) ...
  Preparing to unpack .../libpango1.0-0_1.40.14-1_amd64.deb ...
  Unpacking libpango1.0-0:amd64 (1.40.14-1) over (1.38.1-1) ...
  Preparing to unpack .../libpango-1.0-0_1.40.14-1_amd64.deb ...
  Unpacking libpango-1.0-0:amd64 (1.40.14-1) over (1.38.1-1) ...
  Preparing to unpack .../libgail-3-0_3.22.30-1ubuntu1_amd64.deb ...
  Unpacking libgail-3-0:amd64 (3.22.30-1ubuntu1) over (3.18.9-1ubuntu3.3) ...
  Preparing to unpack .../libgtk-3-0_3.22.30-1ubuntu1_amd64.deb ...
  Unpacking libgtk-3-0:amd64 (3.22.30-1ubuntu1) over (3.18.9-1ubuntu3.3) ...
  Preparing to unpack .../liblircclient0_0.10.0-2_amd64.deb ...
  Unpacking liblircclient0 (0.10.0-2) over (0.9.0-0ubuntu6) ...
  Selecting previously unselected package liblirc-client0:amd64.
  Preparing to unpack .../liblirc-client0_0.10.0-2_amd64.deb ...
  Unpacking liblirc-client0:amd64 (0.10.0-2) ...
  Preparing to unpack .../libclutter-gtk-1.0-0_1.8.4-3_amd64.deb ...
  Unpacking libclutter-gtk-1.0-0:amd64 (1.8.4-3) over (1.6.6-1) ...
  Selecting previously unselected package libgrilo-0.3-0:amd64.
  Preparing to unpack .../libgrilo-0.3-0_0.3.4-1_amd64.deb ...
  Unpacking libgrilo-0.3-0:amd64 (0.3.4-1) ...
  Preparing to unpack .../libgpg-error0_1.27-6_i386.deb ...
  De-configuring libgpg-error0:amd64 (1.21-2ubuntu1) ...
  Unpacking libgpg-error0:i386 (1.27-6) over (1.21-2ubuntu1) ...
  Preparing to unpack .../libgpg-error0_1.27-6_amd64.deb ...
  Unpacking libgpg-error0:amd64 (1.27-6) over (1.21-2ubuntu1) ...
  Processing triggers for libc-bin (2.27-3ubuntu1) ...
  Processing triggers for gnome-menus (3.13.3-6ubuntu3.1) ...
  Processing triggers for mime-support (3.59ubuntu1) ...
  Processing triggers for hicolor-icon-theme (0.15-0ubuntu1) ...
  Processing triggers for man-db (2.7.5-1) ...
  Processing triggers for doc-base (0.10.7) ...
  Processing 1 added doc-base file...
  Setting up libgpg-error0:amd64 (1.27-6) ...
  Setting up libgpg-error0:i386 (1.27-6) ...
  Processing triggers for libc-bin (2.27-3ubuntu1) ...
  (Reading database ... 374274 files and directories currently installed.)
  Preparing to unpack .../libgcrypt20_1.8.1-4ubuntu1_i386.deb ...
  De-configuring libgcrypt20:amd64 (1.6.5-2ubuntu0.4) ...
  Unpacking libgcrypt20:i386 (1.8.1-4ubuntu1) over (1.6.5-2ubuntu0.4) ...
  Preparing to unpack .../libgcrypt20_1.8.1-4ubuntu1_amd64.deb ...
  Unpacking libgcrypt20:amd64 (1.8.1-4ubuntu1) over (1.6.5-2ubuntu0.4) ...
  Processing triggers for libc-bin (2.27-3ubuntu1) ...
  Setting up libgcrypt20:amd64 (1.8.1-4ubuntu1) ...
  Setting up libgcrypt20:i386 (1.8.1-4ubuntu1) ...
  Processing triggers for libc-bin (2.27-3ubuntu1) ...
  (Reading database ... 374274 files and directories currently installed.)
  Preparing to unpack .../libassuan0_2.5.1-2_amd64.deb ...
  Unpacking libassuan0:amd64 (2.5.1-2) over (2.4.2-2) ...
  Processing triggers for libc-bin (2.27-3ubuntu1) ...
  Setting up libassuan0:amd64 (2.5.1-2) ...
  Processing triggers for libc-bin (2.27-3ubuntu1) ...
  (Reading database ... 374274 files and directories currently installed.)
  Preparing to unpack .../gnupg-agent_2.2.4-1ubuntu1_all.deb ...
  Unpacking gnupg-agent (2.2.4-1ubuntu1) over (2.1.11-6ubuntu2) ...
  Selecting previously unselected package gpg-agent.
  Preparing to unpack .../gpg-agent_2.2.4-1ubuntu1_amd64.deb ...
  Unpacking gpg-agent (2.2.4-1ubuntu1) ...
  Preparing to unpack .../debsig-verify_0.18_amd64.deb ...
  Unpacking debsig-verify (0.18) over (0.14) ...
  Preparing to unpack .../gnupg2_2.2.4-1ubuntu1_all.deb ...
  Unpacking gnupg2 (2.2.4-1ubuntu1) over (2.1.11-6ubuntu2) ...
  Preparing to unpack .../libgnupg-interface-perl_0.52-9_all.deb ...
  Unpacking libgnupg-interface-perl (0.52-9) over (0.52-2) ...
  Preparing to unpack .../python-apt_1.6.0_amd64.deb ...
  Unpacking python-apt (1.6.0) over (1.1.0~beta1ubuntu0.16.04.1) ...
  Preparing to unpack .../python3-apt_1.6.0_amd64.deb ...
  /var/lib/dpkg/info/python3-apt.prerm: 6: /var/lib/dpkg/info/python3-apt.prerm: py3clean: not found
  dpkg: warning: subprocess old pre-removal script returned error exit status 127
  dpkg: trying script from the new package instead ...
  /var/lib/dpkg/tmp.ci/prerm: 6: /var/lib/dpkg/tmp.ci/prerm: py3clean: not found
  dpkg: error processing archive /var/cache/apt/archives/python3-apt_1.6.0_amd64.deb (--unpack):
   subprocess new pre-removal script returned error exit status 127
  /var/lib/dpkg/info/python3-apt.postinst: 6: /var/lib/dpkg/info/python3-apt.postinst: py3compile: not found
  dpkg: error while cleaning up:
   subprocess installed post-installation script returned error exit status 127
  Preparing to unpack .../software-properties-common_0.96.24.32.1_all.deb ...
  /var/lib/dpkg/info/software-properties-common.prerm: 6: /var/lib/dpkg/info/software-properties-common.prerm: py3clean: not found
  dpkg: warning: subprocess old pre-removal script returned error exit status 127
  dpkg: trying script from the new package instead ...
  /var/lib/dpkg/tmp.ci/prerm: 6: /var/lib/dpkg/tmp.ci/prerm: py3clean: not found
  dpkg: error processing archive /var/cache/apt/archives/software-properties-common_0.96.24.32.1_all.deb (--unpack):
   subprocess new pre-removal script returned error exit status 127
  /var/lib/dpkg/info/software-properties-common.postinst: 6: /var/lib/dpkg/info/software-properties-common.postinst: py3compile: not found
  dpkg: error while cleaning up:
   subprocess installed post-installation script returned error exit status 127
  Preparing to unpack .../gnupg_2.2.4-1ubuntu1_amd64.deb ...
  Unpacking gnupg (2.2.4-1ubuntu1) over (1.4.20-1ubuntu3.1) ...
  Selecting previously unselected package gpgconf.
  Preparing to unpack .../gpgconf_2.2.4-1ubuntu1_amd64.deb ...
  Unpacking gpgconf (2.2.4-1ubuntu1) ...
  Preparing to unpack .../libksba8_1.3.5-2_amd64.deb ...
  Unpacking libksba8:amd64 (1.3.5-2) over (1.3.3-1ubuntu0.16.04.1) ...
  Processing triggers for man-db (2.7.5-1) ...
  Processing triggers for install-info (6.1.0.dfsg.1-5) ...
  Processing triggers for libc-bin (2.27-3ubuntu1) ...
  Errors were encountered while processing:
   /var/cache/apt/archives/python3-apt_1.6.0_amd64.deb
   /var/cache/apt/archives/software-properties-common_0.96.24.32.1_all.deb
  Exception during pm.DoInstall():  E:Sub-process /usr/bin/dpkg returned an error code (1)

  Could not install the upgrades

  The upgrade has aborted. Your system could be in an unusable state. A 
  recovery will run now (dpkg --configure -a). 

  dpkg: dependency problems prevent configuration of unity-control-center:
   unity-control-center depends on libgnome-desktop-3-17 (>= 3.27.90); however:
    Package libgnome-desktop-3-17 is not installed.

  dpkg: error processing package unity-control-center (--configure):
   dependency problems - leaving unconfigured
  Setting up libexpat1:amd64 (2.2.5-3) ...
  dpkg: dependency problems prevent configuration of libgoa-backend-1.0-1:amd64:
   libgoa-backend-1.0-1:amd64 depends on libgoa-1.0-0b (>= 3.25.4); however:
    Version of libgoa-1.0-0b:amd64 on system is 3.18.3-1ubuntu2.

  dpkg: error processing package libgoa-backend-1.0-1:amd64 (--configure):
   dependency problems - leaving unconfigured
  Setting up liblzma5:amd64 (5.2.2-1.3) ...
  Setting up liblzma5:i386 (5.2.2-1.3) ...
  Setting up libjson-glib-1.0-common (1.4.2-3) ...
  Setting up fontconfig-config (2.12.6-0ubuntu2) ...
  Installing new version of config file /etc/fonts/conf.avail/10-antialias.conf ...
  Installing new version of config file /etc/fonts/conf.avail/10-hinting-full.conf ...
  Installing new version of config file /etc/fonts/conf.avail/10-hinting-medium.conf ...
  Installing new version of config file /etc/fonts/conf.avail/10-hinting-slight.conf ...
  Installing new version of config file /etc/fonts/conf.avail/30-metric-aliases.conf ...
  Installing new version of config file /etc/fonts/conf.avail/40-nonlatin.conf ...
  Installing new version of config file /etc/fonts/conf.avail/45-latin.conf ...
  Installing new version of config file /etc/fonts/conf.avail/53-monospace-lcd-filter.conf ...
  Installing new version of config file /etc/fonts/conf.avail/60-latin.conf ...
  Installing new version of config file /etc/fonts/conf.avail/65-nonlatin.conf ...
  Installing new version of config file /etc/fonts/fonts.conf ...
  dpkg: dependency problems prevent configuration of python3.6:
   python3.6 depends on python3.6-minimal (= 3.6.5-3); however:
    Package python3.6-minimal is not installed.

  dpkg: error processing package python3.6 (--configure):
   dependency problems - leaving unconfigured
  dpkg: dependency problems prevent configuration of python3-apt:
   gnupg (2.2.4-1ubuntu1) breaks python3-apt (<= 1.1.0~beta4) and is unpacked but not configured.
    Version of python3-apt to be configured is 1.1.0~beta1ubuntu0.16.04.1.

  dpkg: error processing package python3-apt (--configure):
   dependency problems - leaving unconfigured
  Setting up glib-networking-common (2.56.0-1) ...
  Setting up libpng16-16:amd64 (1.6.34-1) ...
  Setting up libgtk-3-common (3.22.30-1ubuntu1) ...
  Setting up libreadline7:amd64 (7.0-3) ...
  Setting up libgtop2-common (2.38.0-2) ...
  Setting up gpgconf (2.2.4-1ubuntu1) ...
  Setting up libglib2.0-0:amd64 (2.56.1-2ubuntu1) ...
  dpkg: dependency problems prevent configuration of gnupg:
   gnupg depends on dirmngr (= 2.2.4-1ubuntu1); however:
    Package dirmngr is not installed.
   gnupg depends on gnupg-l10n (= 2.2.4-1ubuntu1); however:
    Package gnupg-l10n is not installed.
   gnupg depends on gnupg-utils (= 2.2.4-1ubuntu1); however:
    Package gnupg-utils is not installed.
   gnupg depends on gpg (= 2.2.4-1ubuntu1); however:
    Package gpg is not installed.
   gnupg depends on gpg-wks-client (= 2.2.4-1ubuntu1); however:
    Package gpg-wks-client is not installed.
   gnupg depends on gpg-wks-server (= 2.2.4-1ubuntu1); however:
    Package gpg-wks-server is not installed.
   gnupg depends on gpgsm (= 2.2.4-1ubuntu1); however:
    Package gpgsm is not installed.
   gnupg depends on gpgv (= 2.2.4-1ubuntu1); however:
    Version of gpgv on system is 1.4.20-1ubuntu3.1.

  dpkg: error processing package gnupg (--configure):
   dependency problems - leaving unconfigured
  Setting up libproxy1v5:amd64 (0.4.15-1) ...
  Setting up linux-libc-dev:amd64 (4.15.0-20.21) ...
  Setting up gpg-agent (2.2.4-1ubuntu1) ...
  Installing new version of config file /etc/X11/Xsession.d/90gpg-agent ...
  Setting up liblirc-client0:amd64 (0.10.0-2) ...
  Setting up libiptc0:amd64 (1.6.1-2ubuntu2) ...
  Setting up glib-networking-services (2.56.0-1) ...
  Setting up libksba8:amd64 (1.3.5-2) ...
  Setting up fonts-texgyre (20160520-1) ...
  Setting up liblircclient0 (0.10.0-2) ...
  Setting up libkrb5support0:amd64 (1.16-2build1) ...
  Setting up libfreetype6:amd64 (2.8.1-2ubuntu2) ...
  Setting up libjson-glib-1.0-0:amd64 (1.4.2-3) ...
  dpkg: dependency problems prevent configuration of gnupg2:
   gnupg2 depends on gnupg (>= 2.2.4-1ubuntu1); however:
    Package gnupg is not configured yet.

  dpkg: error processing package gnupg2 (--configure):
   dependency problems - leaving unconfigured
  Setting up libgettextpo0:amd64 (0.19.8.1-6) ...
  Setting up libsnapd-glib1:amd64 (1.39-0ubuntu1) ...
  Setting up libgrilo-0.3-0:amd64 (0.3.4-1) ...
  Setting up libxtables12:amd64 (1.6.1-2ubuntu2) ...
  Setting up libasprintf0v5:amd64 (0.19.8.1-6) ...
  Setting up libproxy1-plugin-gsettings:amd64 (0.4.15-1) ...
  Setting up libssl1.1:amd64 (1.1.0g-2ubuntu4) ...
  locale: Cannot set LC_ALL to default locale: No such file or directory
  Setting up glib-networking:amd64 (2.56.0-1) ...
  Setting up libpango-1.0-0:amd64 (1.40.14-1) ...
  dpkg: dependency problems prevent configuration of python3-minimal:
   python3-minimal depends on python3.6-minimal (>= 3.6.5-2~); however:
    Package python3.6-minimal is not installed.

  dpkg: error processing package python3-minimal (--configure):
   dependency problems - leaving unconfigured
  Setting up libgnutls-openssl27:amd64 (3.5.18-1ubuntu1) ...
  Setting up libproxy1-plugin-networkmanager:amd64 (0.4.15-1) ...
  Setting up libgettextpo-dev:amd64 (0.19.8.1-6) ...
  Setting up libasprintf-dev:amd64 (0.19.8.1-6) ...
  Setting up libgoa-1.0-common (3.28.0-0ubuntu2) ...
  Setting up libc-dev-bin (2.27-3ubuntu1) ...
  Setting up libcomerr2:amd64 (1.44.1-1) ...
  Setting up libkeyutils1:amd64 (1.5.9-9.2ubuntu2) ...
  Setting up gnupg-agent (2.2.4-1ubuntu1) ...
  dpkg: dependency problems prevent configuration of python-apt:
   python-apt depends on libapt-inst2.0 (>= 1.4~beta3); however:
    Version of libapt-inst2.0:amd64 on system is 1.2.26.
   python-apt depends on libapt-pkg5.0 (>= 1.4~beta3); however:
    Version of libapt-pkg5.0:amd64 on system is 1.2.26.
   python-apt depends on gnupg; however:
    Package gnupg is not configured yet.
   python-apt depends on dirmngr | gnupg (<< 2); however:
    Package dirmngr is not installed.
    Version of gnupg on system is 2.2.4-1ubuntu1.

  dpkg: error processing package python-apt (--configure):
   dependency problems - leaving unconfigured
  Setting up libglib2.0-bin (2.56.1-2ubuntu1) ...
  Setting up libc6-dev:amd64 (2.27-3ubuntu1) ...
  Setting up gnome-desktop3-data (3.28.1-1ubuntu1) ...
  Setting up locales (2.27-3ubuntu1) ...
  Installing new version of config file /etc/locale.alias ...
  Generating locales (this might take a while)...
    en_AG.UTF-8... done
    en_AU.UTF-8... done
    en_BW.UTF-8... done
    en_CA.UTF-8... done
    en_DK.UTF-8... done
    en_GB.UTF-8... done
    en_HK.UTF-8... done
    en_IE.UTF-8... done
    en_IN.UTF-8... done
    en_NG.UTF-8... done
    en_NZ.UTF-8... done
    en_PH.UTF-8... done
    en_SG.UTF-8... done
    en_US.UTF-8... done
    en_ZA.UTF-8... done
    en_ZM.UTF-8... done
    en_ZW.UTF-8... done
  Generation complete.
  Setting up libip6tc0:amd64 (1.6.1-2ubuntu2) ...
  dpkg: dependency problems prevent configuration of libgnupg-interface-perl:
   libgnupg-interface-perl depends on gnupg | gnupg2; however:
    Package gnupg is not configured yet.
    Package gnupg2 is not configured yet.

  dpkg: error processing package libgnupg-interface-perl (--configure):
   dependency problems - leaving unconfigured
  Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-0ubuntu2) ...
  dpkg: dependency problems prevent configuration of software-properties-common:
   gnupg (2.2.4-1ubuntu1) breaks software-properties-common (<= 0.96.24.3) and is unpacked but not configured.
    Version of software-properties-common to be configured is 0.96.20.7.

  dpkg: error processing package software-properties-common (--configure):
   dependency problems - leaving unconfigured
  Setting up libfontconfig1:amd64 (2.12.6-0ubuntu2) ...
  Setting up libip4tc-dev:amd64 (1.6.1-2ubuntu2) ...
  Setting up libgtop-2.0-11:amd64 (2.38.0-2) ...
  dpkg: dependency problems prevent configuration of debsig-verify:
   debsig-verify depends on gpg | gnupg; however:
    Package gpg is not installed.
    Package gnupg is not configured yet.

  dpkg: error processing package debsig-verify (--configure):
   dependency problems - leaving unconfigured
  Setting up libk5crypto3:amd64 (1.16-2build1) ...
  Setting up libip6tc-dev:amd64 (1.6.1-2ubuntu2) ...
  Setting up libxtables-dev:amd64 (1.6.1-2ubuntu2) ...
  Setting up libfcitx-gclient1:amd64 (1:4.2.9.6-1) ...
  Processing triggers for desktop-file-utils (0.22-1ubuntu5.1) ...
  Setting up libharfbuzz0b:amd64 (1.7.2-1ubuntu1) ...
  Setting up libpangoft2-1.0-0:amd64 (1.40.14-1) ...
  Setting up libpython3.6-minimal:amd64 (3.6.5-3) ...
  Setting up libiptc-dev:amd64 (1.6.1-2ubuntu2) ...
  Setting up libexpat1-dev:amd64 (2.2.5-3) ...
  Setting up libkrb5-3:amd64 (1.16-2build1) ...
  Processing triggers for fontconfig (2.11.94-0ubuntu1.1) ...
  Setting up libpython3.6-stdlib:amd64 (3.6.5-3) ...
  Setting up iptables-dev:amd64 (1.6.1-2ubuntu2) ...
  Setting up libpangoxft-1.0-0:amd64 (1.40.14-1) ...
  Setting up libpangocairo-1.0-0:amd64 (1.40.14-1) ...
  Setting up libgtk-3-0:amd64 (3.22.30-1ubuntu1) ...
  Setting up libgssapi-krb5-2:amd64 (1.16-2build1) ...
  Processing triggers for bamfdaemon (0.5.3~bzr0+16.04.20180209-0ubuntu1) ...
  Rebuilding /usr/share/applications/bamf-2.index...
  Setting up libclutter-gtk-1.0-0:amd64 (1.8.4-3) ...
  Setting up libgail-3-0:amd64 (3.22.30-1ubuntu1) ...
  Setting up libunity-control-center1 (15.04.0+18.04.20180216-0ubuntu1) ...
  Setting up libpython3-stdlib:amd64 (3.6.5-3) ...
  Setting up libpango1.0-0:amd64 (1.40.14-1) ...
  Processing triggers for libc-bin (2.27-3ubuntu1) ...
  Errors were encountered while processing:
   unity-control-center
   libgoa-backend-1.0-1:amd64
   python3.6
   python3-apt
   gnupg
   gnupg2
   python3-minimal
   python-apt
   libgnupg-interface-perl
   software-properties-common
   debsig-verify

  Upgrade complete

  The upgrade has completed but there were errors during the upgrade 
  process. 

  To continue please press [ENTER]

  
  Thanks

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