[Bug 1960483] Re: prokka apt package for Ubuntu 20 is unstable.

[Marc Deslauriers]

Thanks for taking the time to report this bug and helping to make Ubuntu
better. We appreciate the difficulties you are facing, but this appears
to be a "regular" (non-security) bug.  I have unmarked it as a security
issue since this bug does not show evidence of allowing attackers to
cross privilege boundaries nor directly cause loss of data/privacy.
Please feel free to report any other bugs you may find.

** Information type changed from Private Security to Public

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Title:
  prokka apt package for Ubuntu 20 is unstable.

Status in ubiquity package in Ubuntu:
  New

Bug description:
  MSG: Failed to load module Bio::SearchIO::hmmer3. Can't locate
  Bio/SearchIO/hmmer3.pm in @INC (you may need to install the
  Bio::SearchIO::hmmer3 module) (@INC contains:
  /home/abraham/anaconda3/envs/prokka_env/lib/perl5/5.32/site_perl
  /home/abraham/anaconda3/envs/prokka_env/lib/perl5/site_perl
  /home/abraham/anaconda3/envs/prokka_env/lib/perl5/5.32/vendor_perl
  /home/abraham/anaconda3/envs/prokka_env/lib/perl5/vendor_perl
  /home/abraham/anaconda3/envs/prokka_env/lib/perl5/5.32/core_perl
  /home/abraham/anaconda3/envs/prokka_env/lib/perl5/core_perl .) at
  /home/abraham/anaconda3/envs/prokka_env/lib/perl5/site_perl/Bio/Root/Root.pm
  line 520.

  STACK Bio::Root::Root::_load_module /home/abraham/anaconda3/envs/prokka_env/lib/perl5/site_perl/Bio/Root/Root.pm:522
  STACK (eval) /home/abraham/anaconda3/envs/prokka_env/lib/perl5/site_perl/Bio/SearchIO.pm:620
  STACK Bio::SearchIO::_load_format_module /home/abraham/anaconda3/envs/prokka_env/lib/perl5/site_perl/Bio/SearchIO.pm:619
  STACK Bio::SearchIO::new /home/abraham/anaconda3/envs/prokka_env/lib/perl5/site_perl/Bio/SearchIO.pm:217
  STACK toplevel /home/abraham/anaconda3/envs/prokka_env/bin/prokka:1113
  -------------------------------------

  
  For more information about the SearchIO system please see the SearchIO docs.
  This includes ways of checking for formats at compile time, not run time
  Can't call method "next_result" on an undefined value at /home/abraham/anaconda3/envs/prokka_env/bin/prokka line 1114.

  ProblemType: Bug
  DistroRelease: Ubuntu 20.04
  Package: ubiquity (not installed)
  ProcVersionSignature: Ubuntu 5.13.0-28.31~20.04.1-generic 5.13.19
  Uname: Linux 5.13.0-28-generic x86_64
  ApportVersion: 2.20.11-0ubuntu27.21
  Architecture: amd64
  CasperMD5CheckResult: skip
  CurrentDesktop: ubuntu:GNOME
  Date: Thu Feb 10 01:59:41 2022
  InstallCmdLine: BOOT_IMAGE=/casper/vmlinuz file=/cdrom/preseed/ubuntu.seed maybe-ubiquity quiet splash ---
  InstallationDate: Installed on 2022-02-01 (9 days ago)
  InstallationMedia: Ubuntu 20.04.3 LTS "Focal Fossa" - Release amd64 (20210819)
  SourcePackage: ubiquity
  Symptom: installation
  UpgradeStatus: No upgrade log present (probably fresh install)

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