[Bug 2031912] Re: glibc 2.38 causes hangs on some openMPI-using packages

Simon Chopin 2031912 at bugs.launchpad.net
Fri Aug 25 16:39:39 UTC 2023


We'll hint glibc to unblock most of the archive, and then I'll upload
this. Given the size of the migration, it'll likely take several britney
runs to move it all. While that happens, I can't upload a new version.

Given all that, and since it's already pretty late on a Friday evening,
I'll push the upload to Monday morning (CEST). A good weekend to all
involved :)

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Title:
  glibc 2.38 causes hangs on some openMPI-using packages

Status in dolfin package in Ubuntu:
  New
Status in glibc package in Ubuntu:
  New
Status in h5py package in Ubuntu:
  New
Status in mpi4py package in Ubuntu:
  New
Status in openmpi package in Ubuntu:
  New

Bug description:
  This occurs on amd64 and armhf.

  Relevant logs:

  706s tests/test_file.py::TestPathlibSupport::test_pathlib_name_match PASSED   [ 65%]
  706s tests/test_file.py::TestPickle::test_dump_error PASSED                   [ 65%]
  10706s tests/test_file.py::TestMPI::test_mpio autopkgtest [16:36:57]: ERROR: timed out on command "su -s /bin/bash ubuntu -c set -e; export USER=`id -nu`; . /etc/profile >/dev/null 2>&1 || true;  . ~/.profile >/dev/null 2>&1 || true; buildtree="/tmp/autopkgtest.izAQWQ/build.Q5d/src"; mkdir -p -m 1777 -- "/tmp/autopkgtest.izAQWQ/python3-mpi-artifacts"; export AUTOPKGTEST_ARTIFACTS="/tmp/autopkgtest.izAQWQ/python3-mpi-artifacts"; export ADT_ARTIFACTS="$AUTOPKGTEST_ARTIFACTS"; mkdir -p -m 755 "/tmp/autopkgtest.izAQWQ/autopkgtest_tmp"; export AUTOPKGTEST_TMP="/tmp/autopkgtest.izAQWQ/autopkgtest_tmp"; export ADTTMP="$AUTOPKGTEST_TMP"; export DEBIAN_FRONTEND=noninteractive; export LANG=C.UTF-8; export DEB_BUILD_OPTIONS=parallel=2; unset LANGUAGE LC_CTYPE LC_NUMERIC LC_TIME LC_COLLATE   LC_MONETARY LC_MESSAGES LC_PAPER LC_NAME LC_ADDRESS   LC_TELEPHONE LC_MEASUREMENT LC_IDENTIFICATION LC_ALL;rm -f /tmp/autopkgtest_script_pid; set -C; echo $$ > /tmp/autopkgtest_script_pid; set +C; trap "rm -f /tmp/autopkgtest_script_pid" EXIT INT QUIT PIPE; cd "$buildtree"; export 'ADT_TEST_TRIGGERS=glibc/2.38-1ubuntu3'; chmod +x /tmp/autopkgtest.izAQWQ/build.Q5d/src/debian/tests/python3-mpi; touch /tmp/autopkgtest.izAQWQ/python3-mpi-stdout /tmp/autopkgtest.izAQWQ/python3-mpi-stderr; /tmp/autopkgtest.izAQWQ/build.Q5d/src/debian/tests/python3-mpi 2> >(tee -a /tmp/autopkgtest.izAQWQ/python3-mpi-stderr >&2) > >(tee -a /tmp/autopkgtest.izAQWQ/python3-mpi-stdout);" (kind: test)

  Full logs: https://autopkgtest.ubuntu.com/results/autopkgtest-
  mantic/mantic/amd64/h/h5py/20230817_163711_290b0@/log.gz

  Marking Critical as this blocks the glibc transition.

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