[Bug 2063981] Re: Noble Numbat distribution upgrade failure too many errors

Sat Aug 3 04:17:29 UTC 2024

[Expired for ubuntu-release-upgrader (Ubuntu) because there has been no
activity for 60 days.]

** Changed in: ubuntu-release-upgrader (Ubuntu)
       Status: Incomplete => Expired

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https://bugs.launchpad.net/bugs/2063981

Title:
  Noble Numbat distribution upgrade failure too many errors

Status in ubuntu-release-upgrader package in Ubuntu:
  Expired

Bug description:
  Environment: Ubuntu 23.10 mantic LTS, wayland, macpro 2013 trashcan,
  luks2 encrypted lvm, gnome 45, kernel Linux 6.5.0-28-generic,

  Upgrading from 23.10, April 27th 2024, via terminal using do-
  distribution-upgrade -d results in too many errors and upgrades fail:

  running "do-distribution-upgrade -d" will fail:

  dpkg: error processing package gnome-keyring (--configure):
   dependency problems - leaving unconfigured
  dpkg: too many errors, stopping
  Processing triggers for dictionaries-common (1.29.7) ...
  Processing triggers for libc-bin (2.39-0ubuntu8) ...
  Errors were encountered while processing:
   libcairo-script-interpreter2:amd64
   libucx0:amd64
   libice-dev:amd64
   libsm-dev:amd64
   sfftw2
   libfftw3-mpi3:amd64
   dbus-daemon
   dbus-user-session
   fftw2
   libdbus-1-dev:amd64
   dbus
   sfftw-dev
   avahi-daemon
   dbus-x11
   gdm3
   libgtk-4-1:amd64
   libpam-systemd:amd64
   language-selector-common
   libcairo2-dev:amd64
   libgtk2.0-dev:amd64
   libgoa-backend-1.0-2:amd64
   fftw-dev
   nautilus
   libpolkit-qt5-1-1:amd64
   dbus-bin
   polkitd
   accountsservice
   libportal-gtk4-1:amd64
   budgie-control-center
   gnome-clocks
   libcanberra-gtk-dev:amd64
   systemd-resolved
   libgtkmm-2.4-dev:amd64
   budgie-session
   gir1.2-gtk-4.0:amd64
   gnome-terminal
   libkf5authcore5:amd64
   xdg-desktop-portal-gtk
   libatspi2.0-dev:amd64
   language-selector-gnome
   libgtk-3-dev:amd64
   tracker
   udisks2
   gir1.2-gnomebg-4.0:amd64
   gnome-control-center
   xdg-desktop-portal
   libapache2-mod-dnssd
   libnma-gtk4-0:amd64
   libkf5configwidgets5:amd64
   gnome-keyring
  Processing was halted because there were too many errors.

  after "apt --fix-broken-install" another failure is encountered:

  Unpacking usb-modeswitch (2.6.1-3ubuntu3) over (2.6.1-3ubuntu2) ...
  Errors were encountered while processing:
   /tmp/apt-dpkg-install-RPCtCO/388-libeccodes-data_2.34.1-1build2_all.deb
  E: Sub-process /usr/bin/dpkg returned an error code (1)

  after "apt full-upgrade" another failure is encountered:

  Preparing to unpack .../5-libeccodes-data_2.34.1-1build2_all.deb ...
  Unpacking libeccodes-data (2.34.1-1build2) over (2.31.1-1) ...
  dpkg: error processing archive /tmp/apt-dpkg-install-JUWoUK/5-libeccodes-data_2.34.1-1build2_all.deb (--unpack):
   unable to open '/usr/share/eccodes/definitions/bufr/tables/0/local/8/78/1/codetables/11199.table.dpkg-new': No such file or directory
  No apport report written because the error message indicates an issue on the local system
                                                                                           Preparing to unpack .../6-libodc-0d_1.5.0-2_amd64.deb ...
  Unpacking libodc-0d:amd64 (1.5.0-2) over (1.4.6-5) ...
  Errors were encountered while processing:
   /tmp/apt-dpkg-install-JUWoUK/5-libeccodes-data_2.34.1-1build2_all.deb
  E: Sub-process /usr/bin/dpkg returned an error code (1)

  and after again running "apt --fix-broken-install" it succeeds:

  a splash appears and it states that grub-efi-amd64 grub boot loader
  was previously installed to a disk that is no longer present, which is
  odd since it is the disk lvm I am installing ubuntu on, I continue by
  selecting /dev/nvme0n1p1

  and after running "apt update/full-upgrade" again it fails:

  (Reading database ... 393989 files and directories currently installed.)
  Preparing to unpack .../libeccodes-data_2.34.1-1build2_all.deb ...
  Unpacking libeccodes-data (2.34.1-1build2) over (2.31.1-1) ...
  dpkg: error processing archive /var/cache/apt/archives/libeccodes-data_2.34.1-1build2_all.deb (--unpack):
   unable to open '/usr/share/eccodes/definitions/bufr/tables/0/local/8/78/1/codetables/11199.table.dpkg-new': No such file or directory
  No apport report written because the error message indicates an issue on the local system
                                                                                           Errors were encountered while processing:
   /var/cache/apt/archives/libeccodes-data_2.34.1-1build2_all.deb
  E: Sub-process /usr/bin/dpkg returned an error code (1)

  and after running "apt --fix-broken-install" and "apt autoremove -y" and "sudo dpkg -i --force-overwrite /var/cache/apt/archives/libeccodes-data_2.34.1-1build2_all.deb" still fails:

  Use 'sudo apt autoremove' to remove them.
  0 upgraded, 0 newly installed, 0 to remove and 2 not upgraded.
  (Reading database ... 386053 files and directories currently installed.)
  Preparing to unpack .../libeccodes-data_2.34.1-1build2_all.deb ...
  Unpacking libeccodes-data (2.34.1-1build2) over (2.31.1-1) ...
  dpkg: error processing archive /var/cache/apt/archives/libeccodes-data_2.34.1-1build2_all.deb (--install):
   unable to open '/usr/share/eccodes/definitions/bufr/tables/0/local/8/78/1/codetables/11199.table.dpkg-new': No such file or directory
  Errors were encountered while processing:
   /var/cache/apt/archives/libeccodes-data_2.34.1-1build2_all.deb

  The following cannot be upgraded:

  sudo apt list --upgradable
  Listing... Done
  libeccodes-data/noble,noble 2.34.1-1build2 all [upgradable from: 2.31.1-1]
  mesa-opencl-icd/noble 24.0.5-1ubuntu1 amd64 [upgradable from: 24.0.3+git2403140111.90dcd95c0e7~m~mesarc5]

  after purging mesa-opencl* and re-installing it and purging libcc* and
  re-installing it these packages install.

  Also reinstalled and enabled gdm3 service since it got stuck at boot
  last three times I tried, prior to reboot.

  With the failed upgrade restarting the computer will result in a hang and fail to load the gdm.service and system will be unusable.

  ProblemType: Bug
  DistroRelease: Ubuntu 23.10
  Package: ubuntu-release-upgrader-core 1:24.04.16
  ProcVersionSignature: Ubuntu 6.5.0-28.29-generic 6.5.13
  Uname: Linux 6.5.0-28-generic x86_64
  NonfreeKernelModules: vboxnetadp vboxnetflt vboxdrv wl
  ApportVersion: 2.27.0-0ubuntu5
  Architecture: amd64
  CasperMD5CheckResult: unknown
  CrashDB: ubuntu
  CrashReports: 644:0:0:1389891:2024-04-27 21:11:23.978236133 -0700:2024-04-27 21:11:23.922238433 -0700:/var/crash/libeccodes-data.0.crash
  CurrentDesktop: ubuntu:GNOME
  Date: Sat Apr 27 21:14:12 2024
  PackageArchitecture: all
  ProcEnviron:
   LANG=en_US.UTF-8
   PATH=(custom, no user)
   SHELL=/bin/bash
   XDG_RUNTIME_DIR=<set>
  RebootRequiredPkgs: Error: path contained symlinks.
  SourcePackage: ubuntu-release-upgrader
  Symptom: dist-upgrade
  UpgradeStatus: Upgraded to mantic on 2024-04-28 (0 days ago)
  VarLogDistupgradeAptclonesystemstate.tar.gz: Error: command ['pkexec', 'cat', '/var/log/dist-upgrade/apt-clone_system_state.tar.gz'] failed with exit code 127: pkexec must be setuid root
  VarLogDistupgradeXorgFixuplog:
   INFO:root:/usr/bin/do-release-upgrade running
   INFO:root:No xorg.conf, exiting

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