Subject: Accepted: clustalw 2.0.7-1 (source)

From: Ubuntu Installer <[email-masked]>
Date: Fri, 30 May 2008 08:12:42 -0000

Accepted:
 OK: clustalw_2.0.7.orig.tar.gz
 OK: clustalw_2.0.7-1.diff.gz
 OK: clustalw_2.0.7-1.dsc
     -> Component: multiverse Section: science

Origin: Debian/unstable
Format: 1.7
Date: Fri,  30 May 2008 08:34:27 +0100
Source: clustalw
Binary: clustalw
Architecture: source
Version: 2.0.7-1
Distribution: intrepid
Urgency: low
Maintainer: Debian-Med Packaging Team <[email-masked]>
Changed-By: Ryan Kavanagh <[email-masked]>
Description: 
 clustalw   - global multiple nucleotide or peptide sequence alignment
Closes: 463591 469442 469443
Changes: 
 clustalw (2.0.7-1) unstable; urgency=low
 .
   * New upstream release.
     - Fixes bug 121: CRLF  in sequence names (Pearson) are not trimmed.
     - Fixes bug 122: convert option broken.
     - Fixes reopened bug 114: profile alignment input didn't work with new
       getSeqRange routines.
     - Fixes bug 119: build with g++ 4.3.
   * Removed debian/patches/bug_119_gpp4.3-autoptr.patch, obsoleted by the
     above correction. 
   * Incremented version number in debian/clustalw.1*
   * Uptated debian/copyright to the latest draft of the format.
 .
 clustalw (2.0.6-1) unstable; urgency=low
 .
   [Charles Plessy]
   * New upstream release:
     - Bugs fixed (fasta input performance, segfault with secondary structure
       mask)
     - Allows mixed-case command line options.
     - Removed unncessary id console output in EMBLFileParser.cpp
   * Updated my email address (debian/control, debian/copyright,
     debian/clustaw.1*).
   * debian/patches/bug_119_gpp4.3-autoptr.patch: upstream patch to build
     clustalw with g++-4.3.
 .
   [Morten Kjeldgaard]
   * debian/clustalw.1*: restored the introduction from Stéphane
     Bortzmeyer original manpage.
   * debian/copyright: updated information about the manpage.
 .
 clustalw (2.0.5-1) unstable; urgency=low
 .
   * New upstream release (fixes problems with gaps).
   * debian/copyright:
     Added a X-Non-Free-Autobuild field to fullfill requirements from
     http://lists.debian.org/msgid-search/[email-masked]
   * Updated CHANGELOG from http://www.clustal.org/download/current/CHANGELOG
   * debian/clustalw.1.xml, rewritten from scratch.
   * debian/clustalw.q: updated from the DocBook sources (Closes: #463591).
 .
 clustalw (2.0.4-1) unstable; urgency=low
 .
   [ Steffen Moeller ]
   * New upstream release
     - Includes new code for UPGMA guide trees. (v. 2.0.0)
     - Includes iterative alignment facility. (v. 2.0.0)
     - fixed bug where Pseudo -FASTA format files were not being processed
       as previously in v1.83 (v. 2.0.3)
     - fixed other bugs to behave more like 1.83, and introduced a new
       '-fullhelp' option. (v 2.0.4) 
   * updated debian/watch
   * moved clustalw.1 into debian folder (easier to work
     with svn-buildpackage)
   * removed README and LICENSE from svn since these are
     now distributed with the upstream sources
 .
   [ Charles Plessy ]
   * debian/copyright made machine-readable.
   * Clustal X is now built in a separate source package.
     (Closes: #469442, #469443)
   * Switched to CDBS.
   * Added lintian override for the presence of /usr/share/doc/clustalw/LICENSE.
   * debian/control:
     - Allowed upload by Debian maintainers.
     - Checked conformance with Policy 3.7.3 (no changes needed).
 .
   [ David Paleino ]
   * debian/control:
     - fixed Debian capitalisation (see bug #456582)
Files: 
 b33852d036aa02252b873b465d736edd 16365 non-free/science optional clustalw_2.0.7-1.diff.gz
 467be383eb4bda388cfc1a8c87601c87 290795 non-free/science optional clustalw_2.0.7.orig.tar.gz
 18704b75dd2c8d9d261f93fd81915c7d 1329 non-free/science optional clustalw_2.0.7-1.dsc