[ubuntu/noble-updates] macs 3.0.1-1 (Accepted)

[Ubuntu Archive Robot]

macs (3.0.1-1) unstable; urgency=medium

  [ Andreas Tille ]
  * New upstream version. Closes: #1056813
  * New Build-Depends: python3-cykhash, python3-hmmlearn
  * Fix location of simde header
  * No runtime dependency from cython
    Closes: #1057991

  [ Michael R. Crusoe ]
  * New upstream version
  * Refreshed patches.
  * d/copyright: MACS2/khash.h→MACS3/fermi-lite/khash.h
  * d/clean: remove temp/ directory leftover from test execution.
    Closes: #1047612
  * d/rules: s/MACS2/MACS3/g for new major version.
  * d/patches/simde: doesn't need forwarding
  * d/control: build dep on newer packaging version of cykhash to pick
    up Python 3.12 support.
  * d/control: build dep on newer packaging version of hmmlearn to pick
    up Python 3.12 support.
  * d/rules: choose a better path to the launch script for testing

  TODO: cmdline test failures:
   16.18.1 checking hmmratac hmmratac_yeast500k_accessible_regions.gappedPeak
   16.18.2 checking hmmratac hmmratac_yeast500k_bedpe_accessible_regions.gappedPeak
   16.18.3 checking hmmratac hmmratac_yeast500k_load_hmm_model_accessible_regions.gappedPeak
   16.18.4 checking hmmratac hmmratac_yeast500k_load_training_regions_accessible_regions.gappedPeak
  * d/patch/no_install_depends_cython.patch removed, applied upstream.
  * add patch to force the use of Python3.
  * d/control: add build-dep on bc for the tests.
  * d/patches/adapt_to_prelease_hmmlearn.patch: patch from the upstream
    author to match the prelease version of hmmlearn in the archive.
  * d/patches/invalid_escape_sequence: fix a SyntaxWarning.

Date: 2024-02-24 16:45:02.436708+00:00
Changed-By: Debian Med <debian-med-packaging at lists.alioth.debian.org>
Signed-By: Ubuntu Archive Robot <ubuntu-archive-robot at lists.canonical.com>
https://launchpad.net/ubuntu/+source/macs/3.0.1-1
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