Ubuntu Archive Auto-Sync
katie at jackass.ubuntu.com
Mon Oct 24 21:44:11 CDT 2005
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Hash: SHA1
Origin: Debian/unstable
Format: 1.7
Date: Tue, 25 Oct 2005 01:59:20 +0100
Source: bioruby
Binary: libbio-ruby1.8, libbio-ruby
Architecture: source
Version: 0.6.4-1
Distribution: dapper
Urgency: low
Maintainer: David Nusinow <dnusinow at debian.org>
Changed-By: Ubuntu Archive Auto-Sync <katie at jackass.ubuntu.com>
Changes:
bioruby (0.6.4-1) unstable; urgency=low
.
* New upstream release
+ siRNA designer class is contributed by Itoshi Nikaido.
(lib/bio/util/sirna.rb)
+ fastacmd wrapper is contributed by Shinji Shigenobu.
(lib/bio/io/fastacmd.rb)
+ bl2seq parser is contributed by Tomoaki Nishiyama.
(lib/bio/appl/bl2seq/report.rb)
+ new application execution factory is provided.
(lib/bio/command.rb)
+ FlatFile class can accept Blast results, Spidey, Blat, Sim4 and some
KEGG formats (KO, GLYCAN, REACTION)
+ some methods are added to SPTr class proposed by Luca Pireddu.
(lib/bio/db/embl/sptr.rb)
+ external2go parser is added. (lib/bio/db/go.rb)
+ improved amino/nucleic data classes to have some handy methods.
(lib/bio/data/)
+ fixed hmmer parser (by Masashi Fujita) and remote execution of blast and
fasta using GenomeNet.
+ some English documentations are added. (doc/)
* Re-organize debian/rules handling of docs
+ Ship new English tutorial and KEGG_API. These are turned to html with rd2
+ Put document building commands in the build target instead of configure
+ Add commands to remove generated documents in the clean target
+ Put package building commands in binary-indep where they belong
* Add build-dependency on rdtool to build html docs using rd2
* Minor debian/copyright cleanup to get rid of stupid lintian warning about
boilerplate
* Change Build-Depends to Build-Depends-Indep
* Update standards version to 3.6.2. No changes needed.
* Add ruby1.8 to recommends for libbio-ruby1.8
.
bioruby (0.6.2-3) unstable; urgency=low
.
* Add watch file
Files:
2682e67fd57d2deb65e765309ff3dd65 613 science optional bioruby_0.6.4-1.dsc
fa3f36d91d5bbe099ec75047fde044d2 6289 science optional bioruby_0.6.4-1.diff.gz
c2549eadd3bea81aad6f55bdcd00f094 307967 science optional bioruby_0.6.4.orig.tar.gz
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Accepted:
bioruby_0.6.4-1.diff.gz
to pool/universe/b/bioruby/bioruby_0.6.4-1.diff.gz
bioruby_0.6.4-1.dsc
to pool/universe/b/bioruby/bioruby_0.6.4-1.dsc
bioruby_0.6.4.orig.tar.gz
to pool/universe/b/bioruby/bioruby_0.6.4.orig.tar.gz
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