[Bug 357072] Re: Segmentation fault when creating a Gaussian input file

[wkmino]

Hi Daniel,

"Can you provide the PDB file? I cannot reproduce a general segmentation
fault when trying to create a Gaussian input file, so it might be
related to your PDB file."

I don't think it is, since I can create a Gaussian input file on a different
computer.  Same pdb, same version of gabedit, only difference is I have
Ubuntu 9 on my home PC and Ubuntu 8 on my laptop.  I included a copy of one
of my pdb's that I couldn't make a Gaussian input file from, but was
successful on my home PC.

"Did you use some special options, when you created the input file?"

No, and when I use a different computer (my computer at home rather than my
laptop) I can create the file easily.  For example, I could have no pdb file
at all in the system, click on create new Gaussian file, and the program
crashes.  The way I have been getting around this, is saving my pdb files
and putting them on a flash drive to bring home and just create them on my
home PC.  Either that or I have a simple LINUX script to extract the
coordinates from a pdb file.

I tried reinstalling gabedit; however, i still see the same segmentation
fault.  I was thinking maybe some files were corrupt, since I can create any
other file.  But still get the same response.

The problem seems to be localize on my laptop computer, is there a way to
completely remove it from my hard drive so that there is no reminisce of it
existing.  That is the only thing I can think of to fix it.

Any help is appreciated,

Warren

On Wed, Jul 15, 2009 at 5:03 PM, Daniel Leidert <daniel.leidert.spam at gmx.net
> wrote:

> Did you use some special options, when you created the input file?
>
> --
> Segmentation fault when creating a Gaussian input file
> https://bugs.launchpad.net/bugs/357072
> You received this bug notification because you are a direct subscriber
> of the bug.
>
> Status in “gabedit” package in Ubuntu: New
>
> Bug description:
> Binary package hint: gabedit
>
> Segmentation fault when creating a Gaussian input file.  The crash only
> occurs when an attempt to make a new Gaussian input file is requested.  All
> other input file types can be requested and completed.  I attempted to
> remove and reinstall, but the program still crashes.  Also, I attempted to
> create a Gaussian input file from the same pdb file on another computer and
> the Gaussian input file was created without complications.  Not sure what is
> causing the bug since it is located on this computer alone.
>


-- 
=========================================
Warren K Mino Jr.
PhD Candidate
Department of Chemistry
University of Florida                      Phone:  352-392-0562
P.O. Box 117200                           Cell:     203-470-8266
Gainesville FL 32611-7200            wkmino at gmail.com
=========================================


** Attachment added: "arg_gly_gly_prot.pdb"
   http://launchpadlibrarian.net/29093709/arg_gly_gly_prot.pdb

-- 
Segmentation fault when creating a Gaussian input file
https://bugs.launchpad.net/bugs/357072
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